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Please run chkdsk to scan the source boot partition and see if it have file system errors. If Yes, fix it and try again.
You can refer to the link: http://technet.microsoft.com/en-us/library/8f7ffab9-a5e7-4de9-907a-0f172b5a6a4e.aspx
C:\Windows\System32 Wed 05/04/2016 10:17:32.68
>chkdsk
The type of the file system is NTFS.

WARNING! F parameter not specified.
Running CHKDSK in read-only mode.

CHKDSK is verifying files (stage 1 of 3)...
168704 file records processed.
File verification completed.
120 large file records processed.
0 bad file records processed.
0 EA records processed.
44 reparse records processed.
CHKDSK is verifying indexes (stage 2 of 3)...
219672 index entries processed.
Index verification completed.
0 unindexed files scanned.
0 unindexed files recovered.
CHKDSK is verifying security descriptors (stage 3 of 3)...
168704 file SDs/SIDs processed.
Security descriptor verification completed.
25485 data files processed.
CHKDSK is verifying Usn Journal...
36608960 USN bytes processed.
Usn Journal verification completed.
Windows has checked the file system and found no problems.

83885055 KB total disk space.
23361992 KB in 111812 files.
84728 KB in 25486 indexes.
0 KB in bad sectors.
273587 KB in use by the system.
65536 KB occupied by the log file.
60164748 KB available on disk.

4096 bytes in each allocation unit.
20971263 total allocation units on disk.
15041187 allocation units available on disk.

C:\Windows\System32 Wed 05/04/2016 10:18:52.82

As you can see found no problems.

I try again anyway.
Ok, I ran WinToUSB again.

wintousb
11:44 AM 5/4/2016
wintousb clone
Microsoft Windows 7 Starter (x86)
6.1.760 Build 7600
C:, NTFS, Used: 22.17 GB, Capacity: 80.00 GB
Legacy BIOS
next
11:45 AM 5/4/2016
formating
11:45 AM 5/4/2016
system and boot
11:46 AM 5/4/2016
reboot required
and says success!

So, thinks it worked, no error messages.

So, I tell laptop to boot from USB.

Says OK, booted up. little slow.

But, just like last time, C: disk is NOT the USB.

When I run cmd as administrator, and do "set" get weird mix.

cmd opens in

USERPROFILE=C:\Users\Honey
windir=E:\Windows

E:\Windows\system32>

E: is usb

and set gets:

E:\Windows\System32 Wed 05/04/2016 13:58:29.41
>set
ALLUSERSPROFILE=E:\ProgramData
APPDATA=C:\Users\Honey\AppData\Roaming
CommonProgramFiles=C:\Program Files\Common Files
COMPUTERNAME=HONEY-PC
ComSpec=E:\Windows\system32\cmd.exe
configsetroot=E:\Windows\ConfigSetRoot
FP_NO_HOST_CHECK=NO
HOMEDRIVE=C:
HOMEPATH=\Users\Honey
LOCALAPPDATA=C:\Users\Honey\AppData\Local
LOGONSERVER=\\HONEY-PC
NUMBER_OF_PROCESSORS=2
OS=Windows_NT
Path=E:\Windows\SYSTEM32;E:\Windows;E:\Windows\SYSTEM32\WBEM;E:\Windows\SYSTEM32
\WINDOWSPOWERSHELL\V1.0\;C:\Program Files\Calibre2\
PATHEXT=.COM;.EXE;.BAT;.CMD;.VBS;.VBE;.JS;.JSE;.WSF;.WSH;.MSC
PROCESSOR_ARCHITECTURE=x86
PROCESSOR_IDENTIFIER=x86 Family 6 Model 28 Stepping 10, GenuineIntel
PROCESSOR_LEVEL=6
PROCESSOR_REVISION=1c0a
ProgramData=E:\ProgramData
ProgramFiles=C:\Program Files
PROMPT=$P $D $T $_$G
PSModulePath=E:\Windows\system32\WindowsPowerShell\v1.0\Modules\
PUBLIC=E:\Users\Public
SystemDrive=E:
SystemRoot=E:\Windows
TEMP=C:\Users\Honey\AppData\Local\Temp
TMP=C:\Users\Honey\AppData\Local\Temp
USERDOMAIN=Honey-PC
USERNAME=Honey
USERPROFILE=C:\Users\Honey
windir=E:\Windows

E:\Windows\System32 Wed 05/04/2016 13:58:34.23

So, did it boot from clone on USB or what?
Is this a bootable USB or not?

I am thoroughly confused now.
Oh, and Disk Management, in Computer Management, shows E: is my USB. It also shows E as:
Healthy (System, Boot, Active, Crash Dump. Primary Partition)

C is Active Primary Partition

and

D is Primary Partition

So, says booted from E?
Oh, and Disk Management, in Computer Management, shows E: is my USB. It also shows E as:
Healthy (System, Boot, Active, Crash Dump. Primary Partition)

C is Active Primary Partition

and

D is Primary Partition

So, says booted from E?
Please boot up from the USB drive, run regedit.exe as administrator and delete all the values under the HKEY_LOCAL_MACHINE\SYSTEM\MountedDevices registry key, then reboot to see whether the problem is resolved.
Thank you, that seemed to work perfectly.
(05-06-2016, 03:24 AM)feeldumb Wrote: [ -> ]Thank you, that seemed to work perfectly.

That's great. We have fixed this preblem in V3.0 beta, please help us to test it: http://www.easyuefi.com/wintousb/downloads/WinToUSB_Setup_3.0_Beta.exe
Thanks.
Well, I would like to help you test it, since you helped me so much. However, my laptop has since broken (power socket busted) and my new desktop running windows 7 64 bit has 37.6gb in its disk, and I don't have a large enough usb for that.
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